SUBJECTS : Systems Biology | Bioinformatics | Computational Chemistry | Drug Discovery | Genomics | Proteomic
Computational and Structural Biotechnology Journal: 2023, vol: 21, issue:
- 1)- Ruizhen Zhao, Wei Cheng, Juan Shen, Weiming Liang, Zhao Zhang, Yifei Sheng, Tailiang Chai, Xueting Chen, Yin Zhang, Xiang Huang, Huanjie Yang, Chunqing Song, Li Pang, Cuoji Nan, Yangrui Zhang, Rouxi Chen, Junpu Mei, Hong Wei, Xiaodong Fang. Single-cell and spatiotemporal transcriptomic analyses reveal the effects of microorganisms on immunity and metabolism in the mouse liver. Computational and structural biotechnology journal. 2023, 21: 3466-3477
Cited : 3Read More - 2)- Kaijie Zhang, Jianing Yue, Li Yin, Jinyi Chen, Yunlu Chen, Lanting Hu, Jian Shen, Naiji Yu, Yunxia Gong, Zhenjie Liu. Comprehensive bioinformatics analysis revealed potential key genes and pathways underlying abdominal aortic aneurysm. Computational and structural biotechnology journal. 2023, 21: 5423-5433Cited : 4Read More
- 3)- Arata Hayashi, Shmuel Ruppo, Elisheva E Heilbrun, Chiara Mazzoni, Sheera Adar, Moran Yassour, Areej Abu Rmaileh, Yoav D Shaul. GENI: A web server to identify gene set enrichments in tumor samples. Computational and structural biotechnology journal. 2023, 21: 5531-5537Cited : 4Read More
- 4)- Yilin Ye, Yiming Shen, Jian Wang, Dong Li, Yu Zhu, Zhao Zhao, Youdong Pan, Yi Wang, Xing Liu, Ji Wan. SIGANEO: Similarity network with GAN enhancement for immunogenic neoepitope prediction. Computational and structural biotechnology journal. 2023, 21: 5538-5543Cited : 1Read More
- 5)- Mengyu Li, Hongzhao Wang, Zhenwu Yang, Longgui Zhang, Yushan Zhu. DeepTM: A deep learning algorithm for prediction of melting temperature of thermophilic proteins directly from sequences. Computational and structural biotechnology journal. 2023, 21: 5544-5560Cited : 9Read More
- 6)- Qingsong Lu, Yu Lou, Xiaozhen Zhang, Hanshen Yang, Yan Chen, Hanjia Zhang, Tingbo Liang, Xueli Bai. Integrative analysis identified two subtypes and a taurine-related signature to predict the prognosis and efficacy of immunotherapy in hepatocellular carcinoma. Computational and structural biotechnology journal. 2023, 21: 5561-5582Cited : 0Read More
- 7)- Fanjie Wu, Chenghao Lin, Yutong Han, Dingli Zhou, Kang Chen, Minglei Yang, Qinyuan Xiao, Haiyue Zhang, Weizhong Li. Multi-omic analysis characterizes molecular susceptibility of receptors to SARS-CoV-2 spike protein. Computational and structural biotechnology journal. 2023, 21: 5583-5600Cited : 0Read More
- 8)- Wookjin Choi, Chia-Ju Liu, Sadegh Riyahi Alam, Jung Hun Oh, Raj Vaghjiani, John Humm, Wolfgang Weber, Prasad S Adusumilli, Joseph O Deasy, Wei Lu. Preoperative F-FDG PET/CT and CT radiomics for identifying aggressive histopathological subtypes in early stage lung adenocarcinoma. Computational and structural biotechnology journal. 2023, 21: 5601-5608Cited : 1Read More
- 9)- Sophie Charrasse, Titouan Poquillon, Charlotte Saint-Omer, Manuela Pastore, Benoit Bordignon, Richard E Frye, Christelle Reynes, Victor Racine, Abdel Aouacheria. Quantitative assessment of mitochondrial morphology relevant for studies on cellular health and environmental toxicity. Computational and structural biotechnology journal. 2023, 21: 5609-5619Cited : 3Read More
- 10)- Fabio Hernan Gil Zuluaga, Nancy D'Arminio, Francesco Bardozzo, Roberto Tagliaferri, Anna Marabotti. An automated pipeline integrating AlphaFold 2 and MODELLER for protein structure prediction. Computational and structural biotechnology journal. 2023, 21: 5620-5629Cited : 2Read More
- 11)- Brayon J Fremin, Ami S Bhatt, Nikos C Kyrpides. Identification of over ten thousand candidate structured RNAs in viruses and phages. Computational and structural biotechnology journal. 2023, 21: 5630-5639Cited : 0Read More
- 12)- Carlotta Aurora Lupatelli, Agnes Attard, Marie-Line Kuhn, Celine Cohen, Philippe Thomen, Xavier Noblin, Eric Galiana. Automated high-content image-based characterization of microorganism behavioral diversity and distribution. Computational and structural biotechnology journal. 2023, 21: 5640-5649Cited : 1Read More
- 13)- Alberto Di Martino, Eleonora Villari, Riccardo Poluzzi, Matteo Brunello, Valentino Rossomando, Claudio D'Agostino, Federico Ruta, Cesare Faldini. Role of biophysical stimulation in multimodal management of vertebral compression fractures. Computational and structural biotechnology journal. 2023, 21: 5650-5661Cited : 2Read More
- 14)- Atefeh Afsar, Min Chen, Zhenyu Xuan, Li Zhang. A glance through the effects of CD4 T cells, CD8 T cells, and cytokines on Alzheimer's disease. Computational and structural biotechnology journal. 2023, 21: 5662-5675Cited : 3Read More
- 15)- Monica F Danilevicz, Mitchell Gill, Cassandria G Tay Fernandez, Jakob Petereit, Shriprabha R Upadhyaya, Jacqueline Batley, Mohammed Bennamoun, David Edwards, Philipp E Bayer. DNABERT-based explainable lncRNA identification in plant genome assemblies. Computational and structural biotechnology journal. 2023, 21: 5676-5685Cited : 3Read More
- 16)- Bernard Fongang, Yannick N Wadop, Yingjie Zhu, Eric J Wagner, Andrzej Kudlicki, Maga Rowicka. Coevolution combined with molecular dynamics simulations provides structural and mechanistic insights into the interactions between the integrator complex subunits. Computational and structural biotechnology journal. 2023, 21: 5686-5697Cited : 0Read More
- 17)- Cheng-Yu Tsai, Ying-Chang Lu, Yen-Hui Chan, Navaneethan Radhakrishnan, Yuan-Yu Chang, Shu-Wha Lin, Tien-Chen Liu, Chuan-Jen Hsu, Pei-Lung Chen, Lee-Wei Yang, Chen-Chi Wu. Simulation-predicted and -explained inheritance model of pathogenicity confirmed by transgenic mice models. Computational and structural biotechnology journal. 2023, 21: 5698-5711Cited : 2Read More
- 18)- Lingzhi Qu, Hang Lin, Shuyan Dai, Ming Guo, Xiaojuan Chen, Longying Jiang, Huajun Zhang, Maoyu Li, Xunjun Liang, Zhuchu Chen, Hudie Wei, Yongheng Chen. Structural insight into the macrocyclic inhibitor TPX-0022 of c-Met and c-Src. Computational and structural biotechnology journal. 2023, 21: 5712-5718Cited : 0Read More
- 19)- Wanchen Zou, Ruize Sun, Aifang Yao, Mei Zhou, Xiaoling Chen, Chengbang Ma, Tao Wang, Yangyang Jiang, Tianbao Chen, Chris Shaw, Lei Wang. A promising antibiotic candidate, brevinin-1 analogue 5R, against drug-resistant bacteria, with insights into its membrane-targeting mechanism. Computational and structural biotechnology journal. 2023, 21: 5719-5737Cited : 2Read More
- 20)- Matteo Schiavinato, Valentina Del Olmo, Victor Njenga Muya, Toni Gabaldón. JLOH: Inferring loss of heterozygosity blocks from sequencing data. Computational and structural biotechnology journal. 2023, 21: 5738-5750Cited : 1Read More
- 21)- Tingting Chen, Jiayu Guo, Liqiang Ai, Yuquan Wang, Yan Wang, Bo Chen, Mingyue Liu, Shuping Zhuang, Kaidong Liu, Zhangxiang Zhao, Haihai Liang, Yunyan Gu. Up-regulated SPP1 increases the risk from IPF to lung cancer via activating the pro-tumor macrophages. Computational and structural biotechnology journal. 2023, 21: 5751-5764Cited : 3Read More
- 22)- Swati Dhasmana, Anupam Dhasmana, Stella Rios, Iris A Enriquez-Perez, Sheema Khan, Farrukh Afaq, Shafiul Haque, Upender Manne, Murali M Yallapu, Subhash C Chauhan. An integrated computational biology approach defines the crucial role of TRIP13 in pancreatic cancer. Computational and structural biotechnology journal. 2023, 21: 5765-5775Cited : 0Read More
- 23)- Houssemeddine Derbel, Zhongming Zhao, Qian Liu. Accurate prediction of functional effect of single amino acid variants with deep learning. Computational and structural biotechnology journal. 2023, 21: 5776-5784Cited : 3Read More
- 24)- Arber Qoku, Nikoletta Katsaouni, Nadine Flinner, Florian Buettner, Marcel H Schulz. Multimodal analysis methods in predictive biomedicine. Computational and structural biotechnology journal. 2023, 21: 5829-5838Cited : 2Read More
- 25)- Wenbin Zhao, Xiaowei Luo, Fan Tong, Xiangwen Zheng, Jing Li, Guangyu Zhao, Dongsheng Zhao. Improving antibody optimization ability of generative adversarial network through large language model. Computational and structural biotechnology journal. 2023, 21: 5839-5850Cited : 1Read More
- 26)- Paleerath Peerapen, Wanida Boonmark, Pattaranit Putpeerawit, Supatcha Sassanarakkit, Visith Thongboonkerd. Proteomic and computational analyses followed by functional validation of protective effects of trigonelline against calcium oxalate-induced renal cell deteriorations. Computational and structural biotechnology journal. 2023, 21: 5851-5867Cited : 4Read More
- 27)- Ruth A Stoney, Erik K R Hanko, Pablo Carbonell, Rainer Breitling. SelenzymeRF: updated enzyme suggestion software for unbalanced biochemical reactions. Computational and structural biotechnology journal. 2023, 21: 5868-5876Cited : 2Read More
